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building the SPS 1.1.0 executable
| Volet |
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| NOTE: |
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| environment |
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| variable |
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| storage_model |
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| MUST |
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| BE |
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| DEFINED |
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NEW WAY
| Volet |
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# |
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(uses |
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github |
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for |
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public |
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code) |
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git |
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clone |
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https://github.com/mfvalin/SPS |
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my_sps |
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cd |
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my_sps |
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. |
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./.setenv.dot |
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rde |
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mklink # links to compile sps rde mkdep # create Makefile and dependencies make obj # compile make sps # build executable linkit # links to run sps sps.ksh # run sps (quick test run) # # time for a stronger test run # mkdir some_demo_run_directory |
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cp |
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DemoConfigs/* |
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some_demo_run_directory |
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cp |
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sps_Linux_x86-64.Abs |
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some_demo_run_directory |
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# |
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cd |
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some_demo_run_directory |
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vi |
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configexp.cfg |
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# edit |
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exper_archive=... |
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to |
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point |
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it |
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to |
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an |
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existing |
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directory |
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# |
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# |
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configexp.cfg |
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is |
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set |
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for |
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a |
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3 |
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month |
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run |
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on |
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2 |
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processors |
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# |
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. |
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s.ssmuse.dot |
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sps/1.1.0.2 |
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run_sps.sh |
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2>&1 |
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| |
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tee |
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run.txt |
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OLD WAY (HISTORICAL, do not use)
(legacy, vanilla, deprecated version)
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Making runs with the SPS 1.1.0 executable
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Create a
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directory
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for
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the
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configuration
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| Volet |
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mkdir |
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SPS_run_directory |
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cd |
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SPS_run_directory |
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. |
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s.ssmuse.dot |
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sps/1.1.0.2 |
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1 |
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- |
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get |
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necessary |
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files |
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(sample |
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configuration |
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files |
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will |
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be |
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found |
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in |
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the |
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DemoConfigs |
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directory |
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of |
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th |
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edistribution) |
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configexp.cfg |
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(experiment |
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configuration |
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file) |
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sps.cfg |
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(namelists |
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read |
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by |
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sps |
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executable) |
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sps.dict |
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(special |
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namelists |
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for |
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sps, |
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normally |
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used |
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as |
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is) |
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outcfg.out |
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(output |
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configuration) |
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sps_Linux_x86-64.Abs |
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(sps |
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executable, |
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see |
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above |
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to |
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build |
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it) |
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physics_input_table |
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(table |
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describing |
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physics |
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variables |
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and |
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their |
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interpolation |
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rules) |
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dyn_input_table |
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(table |
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describing |
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dynamics |
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variables |
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and |
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their |
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interpolation |
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rules) |
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2 |
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- |
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edit |
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config |
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files |
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appropriately |
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(do |
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not |
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forget |
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to |
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set |
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dates |
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in |
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configexp.cfg) |
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3 |
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- |
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run_sps.sh |
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Typical contents
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of
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configexp.cfg
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| Volet |
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exper='experiment_001' |
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# name of the experiment # UM_EXEC_climato, UM_EXEC_geophy, UM_EXEC_inrep, |
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UM_EXEC_anal |
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should |
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be |
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left |
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AS |
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IS |
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UM_EXEC_climato=Data/Input/climato |
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UM_EXEC_geophy=Data/Input/ |
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UM_EXEC_inrep=Data/Input/inrep |
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UM_EXEC_anal=Data/Input/anal |
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# |
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#UM_EXEC_driving_data=$(pwd |
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-P)/driving_data |
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SPS_phy_intable=$(pwd |
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-P)/physics_input_table |
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SPS_dyn_intable=$(pwd |
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-P)/dyn_input_table |
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# |
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exper_archive=${HOME}/ARCHIVE |
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# where output is to be sent by post_sps.sh # exper_climato="${HOME}/project/SPS/Data/Input/climato" |
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# climatology file exper_geophy="${HOME}/project/SPS/Data/Input/Gem_geophy.fst" |
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# geophysical fields file # # anal_*_YYYYMMDD |
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or |
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anal_*_YYYYMMDD_yyy |
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(expected |
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names |
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for |
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initial |
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conditions |
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files) |
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# |
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exper_anal0=${HOME}/project/SPS_DATA/ANAL/anal_WestNA_0.25_ERA_dyn_v12_PRSF_19790101 |
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# initial |
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conditions |
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file |
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exper_anal1=$(pwd |
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-P)/Data_disk/Input/inrep/INI |
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# directory where initial conditions can be found exper_anal2=${exper_archive}/${exper} |
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# directory where initial conditions can be found # exper_depot1=${MODEL_DATA}/Offline_driving/ERA-Interim_0.75/6h_Analysis |
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# where |
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driving |
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data |
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can |
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be |
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found |
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by |
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pre_sps.sh |
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exper_depot2=${MODEL_DATA}/SST_SeaIce/ERA-Interim_0.75deg |
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# where driving data can be found by pre_sps.sh |
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# |
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# |
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date |
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format: |
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YYYYMMDD |
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exper_start_date=19790101 |
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# start date (MUST start on the first day of a month) exper_end_date=19800104 |
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# last date (ignored if > exper_fold_date) |
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extra_time=00:00:00 |
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# added to end_date exper_fold_date=19850201 |
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# "back to the past" date (ignored if > exper_end_date) # # exper_delta='1month' # MUST be 1month for now exper_deltat=21600 # 6 hour time step exper_cpu_config='--verbosity=error |
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--ptopo=4x4x1' |
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# configuration for sps.ksh |
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exper_cpu_config2='--verbosity=error |
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--ptopo=3x3x1' |
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# alternate configuration for sps.ksh |
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# |
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# |
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the |
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following |
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variables |
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get |
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read |
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and |
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adjusted |
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by |
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pre_sps.sh, |
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run_sps.sh, |
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and |
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post_sps.sh |
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# exper_current_date |
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is the starting date for the current monthly step # exper_current_year |
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is the current year number in this multi year integration (should start at 1) # if exper_current_year |
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== |
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0 |
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, |
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no |
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extension |
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is |
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used |
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for |
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outputs |
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or |
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initial |
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conditions |
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# exper_cycle_year |
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is the number of years to run # exper_current_date='19790101' |
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exper_cycle_year='2' |
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exper_current_year='1' |
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Example of
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physics_input_table
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for
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ISBA
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| Volet |
|---|
in=MG; |
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freq=0; |
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search=GEOP; |
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interp=near; |
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in=LH; |
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freq=0; |
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search=GEOP; |
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interp=linear; |
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in=Y7; |
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freq=0; |
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search=GEOP; |
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interp=linear; |
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in=Y8; |
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freq=0; |
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search= |
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GEOP; interp=linear; |
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in=Y9; |
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freq=0; |
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search=GEOP; |
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interp=linear; |
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in=GA; |
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freq=0; |
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search=GEOP; |
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interp=near; |
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in=ZP; |
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freq=0; |
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search=GEOP; |
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interp=near; |
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in=VF |
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; freq=0; |
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search=GEOP; |
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interp=near; |
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levels= 1,26; |
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in=VG; |
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freq=0; |
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search=GEOP; |
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interp=near; |
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in=ME; |
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freq=0; |
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search=GEOP; |
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interp=near; |
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in=J1 |
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; freq=0; |
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search=GEOP; |
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interp=near; |
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levels= 1,3; |
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in=J2; |
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freq=0; |
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search=GEOP; |
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interp=near; |
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levels= 1,3; |
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in=FSA; |
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freq=0; |
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search=GEOP; |
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interp=linear; |
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levels= |
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1,4; |
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in=SLA; |
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freq=0; |
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search=GEOP; |
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interp=linear; |
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levels= |
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1,4; |
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in=AL; |
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freq=0; |
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search=GEOP,CLIM; |
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interp=near; |
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timeint=any; |
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#etk=NO |
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SNOW |
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in=TSG; |
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freq=0; |
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search= |
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ANAL; interp=linear; |
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levels= |
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1,8; |
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in=GLD; |
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freq=0; |
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search=ANAL; |
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interp=linear; |
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in=GLF; |
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freq=0; |
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search=ANAL; |
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interp=linear; |
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in=GVOL; |
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freq=0; |
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search=ANAL; |
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interp=linear; |
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in=GVLT; |
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freq=0; |
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search=ANAL; |
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interp=linear; |
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in=ITGL; |
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freq=0; |
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search=ANAL; |
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interp=linear; |
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levels= |
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1,16; |
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in=TM; |
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freq=0,1; |
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search=ANAL,INREP; |
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interp=linear; |
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timeint=linear |
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in=I0 |
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; freq=0; |
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search=ANAL; |
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interp=near; |
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levels= 1,2; |
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in=I1; |
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freq=0; |
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search=ANAL; |
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interp=near; |
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levels= 1,2; |
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in=I2; |
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freq=0; |
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search= |
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ANAL; interp=near; |
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levels= 1,2; |
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in=I3; |
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freq=0; |
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search=ANAL; |
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interp=near; |
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in=I4; |
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freq=0; |
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search=ANAL; |
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interp=near; |
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in=I6; |
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freq=0; |
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search= |
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ANAL; interp=near; |
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in=I7; |
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freq=0; |
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search=ANAL; |
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interp=linear; |
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levels= |
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1,3; |
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in=I8; |
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freq=0; |
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search=ANAL,CLIM; |
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interp=near; |
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timeint=linear |
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in=I9; |
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freq=0; |
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search=ANAL; |
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interp=linear; |
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levels= |
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1,2; |
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in=DN; |
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freq=0; |
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search=ANAL; |
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interp=near; |
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in=SD; |
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freq=0; |
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search=ANAL,CLIM; |
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interp=near; |
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levels= 1,5; |
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timeint=linear |
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in=LG; |
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freq=0,1; |
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search=ANAL,INREP; |
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interp=near; |
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timeint=linear |
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in=HS; |
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freq=0; |
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search=ANAL,CLIM; |
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interp=near; |
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timeint=linear |
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in=ICEL; |
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freq=0; |
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search=ANAL,CLIM; |
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interp=near; |
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timeint=linear |
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in=XA; |
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freq=0; |
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search=ANAL; |
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interp=near; |
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in=AD; |
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freq=0,1; |
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search=ANAL,INREP |
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; interp=linear; |
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timeint=linear |
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in=N4; |
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freq=0,1; |
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search=ANAL,INREP; |
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interp=linear; |
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timeint=linear |
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in=PR; |
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freq=0,1; |
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search=ANAL,INREP; |
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interp=linear; |
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timeint=next |
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in=MF; |
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freq=0; |
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search=GEOP; interp=linear; |
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in=BME; |
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freq=0; |
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search=GEOP; |
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interp=linear; |
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levels= |
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1,8; |
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in=BFR; |
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freq=0; |
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search=GEOP; |
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interp=linear; |
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levels= |
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1,8; |
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in=PRSF; |
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freq=0; |
...
search=GEOP; |
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interp=linear; |
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levels= |
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1,12; |
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in=GLNM; |
...
freq=0; |
...
search=GEOP; |
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interp=linear; |
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...
Example sps.cfg
...
version=100
...
| Volet |
|---|
@grid_cfgs |
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Grd_typ_S |
...
= |
...
'LU' |
...
Grd_ |
...
dx = 0.25 Grd_dy = 0.25 Grd_ni = 144 Grd_nj = 115 Grd_iref = 82 Grd_jref = 60 Grd_latr = 0.0 Grd_lonr = 180.0 Grd_xlat1 = 57.5 Grd_xlon1 = -130. Grd_xlat2 = 0. Grd_xlon2 = -40. @time_cfgs Step_runstrt_S = '19790101.000000' Step_dt = 21600. Step_gstat = 12 Step_bkup = -1 Step_total = 124 @levels_cfgs Lvl_typ_S = 'HU' Lvl_ptop_8 = 10.0 Lvl_NoTopThL_L = .false. Lvl_Tlift_L = .false. @sps_cfgs ip1a = 93423264 int_accu_S = 'CONST' adapt_L = .FALSE. lapserate = 0.0065 read_hu_L = .TRUE. @ &physics_cfgs schmsol = 'ISBA' , zta=2.0, zua=10.0, LIMSNODP = .true., ICEMELT = .true., / |
SPS 5.8.3 based on GEM 4.8.3, physics 5.8.3, INTEL fortran 14.0.2/14.0.4
available Available on UQAM servers, availability on guillimin to follow soon
...
.
Using SPS 5.8.3 (always necessary before any of the following actions)
| Volet |
|---|
| . |
...
| s.ssmuse.dot |
...
| sps/5.8.3 |
...
make |
...
| sure |
...
| that |
...
| ${HOME}/ARCHIVE |
...
| points |
...
| to |
...
| archival |
...
| space |
...
NOTE: |
...
| environment |
...
| variable |
...
| storage_model |
...
| MUST |
...
| BE |
...
| DEFINED |
...
DEMO SPS 5.8.3
| Volet |
|---|
...
| mkdir |
...
| my_directory |
...
cd |
...
| my_directory |
...
get_sps_demo_ |
...
| configs # |
...
| get |
...
| a |
...
| working |
...
| set |
...
| of |
...
| config |
...
| files |
...
run_sps.sh |
...
sps SPS will run with a demo configuration and data for 12 months (19790101 -> 19800101)
...
Building the SPS 5.8.3 executable
| Volet |
|---|
| mkdir |
...
| my_directory |
...
cd |
...
| my_directory |
...
ouv_exp_sps |
...
rdemkdep rdemklink make dep make sps The executable will be found at build-linux26-x86-64/bin/intel1400/sps_Linux_x86-64.Abs |
...
...
Running SPS 5.8.3
...
Same steps
...
as
...
the
...
demo,
...
but
...
with
...
your
...
own
...
config
...
files
...
pointing
...
to
...
your
...
driving
...
data
...
and
...
probably
...
your
...
own
...
executable
...
.