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#!/bin/bash

#  Set the following parameters
exp=domain_name                            # Domain name (name of geophys files)
geo_dir=/Full/path/of/Geophys/directory    # Full(!) path of destination directory containing already(!!!) the file 'tape1.model'
                                           #   -> must NOT be in the home!!!
                                           #   Example: exp=/Full/path/of/Geophys/directory/Geophys_${exp}
email="your.email@address"                 # Email address to which a confirmation email will get send after completion

# Set following parameters to dataset of your choice, following above examples:
TOPO=...
VEGE=...
MASK=...
SOIL=...

# ======================================================================================


module load utils/SPI
geophys=geophys_${exp}
GENPHYSX=GenPhysX
tictacs=tape1_model

cd ${geo_dir}

# Using Ayrton's new sharp low pass filter:
cat > parameter_file.txt << EOF
set GenX::Param(DBase)                      /BIG3home/data/Geophys/Database/Dorval

set GenX::Settings(GRD_TYP_S)               LU
set GenX::Settings(TOPO_DGFMS_L)            False
set GenX::Settings(TOPO_DGFMX_L)            False
set GenX::Settings(TOPO_FILMX_L)            False
set GenX::Settings(TOPO_CLIP_ORO_L)         False
#                         
set Log::Param(Level)                       DEBUG
set GeoPhysX::Opt(LegacyMode)               False
set GenX::Param(Z0Topo)                     LEGACY
set GenX::Settings(TOPO_ZREF_ZV_RATIO_C)    True
set GenX::Settings(TOPO_RUGV_ZVG2)          True
set GenX::Settings(TOPO_RUGV_MG)            True
set GenX::Settings(TOPO_ZV_MIN_THRESHOLD)   0.0003
set GenX::Settings(TOPO_WATER_RUGV)         0.001

# ne pas filter le champs MENF a l entree du calcul de Z0, ZP
set GenX::Param(MEFilterForZ0)              None

# Ayrton's new sharp low pass filter
set GenX::Settings(LPASSFLT_RC_DELTAX)         5.0
set GenX::Settings(LPASSFLT_P)                 20
set GenX::Settings(LPASSFLT_MASK_OPERATOR)     1
set GenX::Settings(LPASSFLT_MASK_THRESHOLD)    100.0
set GenX::Settings(LPASSFLT_APPLY_MINMAX)      True

# Mapping tables
set GenX::Path(CCILC_LUT_CSV)              /home/winger/Scripts/GenPhysX/CCI_LC/CCI_LC_lut.csv
set GenX::Path(USGS_GLCC_LUT_CSV)          /home/winger/Scripts/GenPhysX/CCI_LC/USGS_GLCC_lut2.csv
set GenX::Path(NALCMS_LUT_CSV)             /home/winger/Scripts/GenPhysX/CCI_LC/NALCMS_lut2.csv
set GenX::Param(UseVegeLUT)                True
#set GenX::Param(AddHydroLakesToMask)       True

EOF

# Execute GenPhysX
$GENPHYSX-gridfile${tictacs}-param parameter_file.txt -mask$MASK-vege$VEGE-topo$TOPO-soil$SOIL-check STD -celldim2-z0topo LEGACY -mefilter LPASS -result${geophys}-subgrid STD  -mail${email}